3G5G Transcription Regulator date Feb 05, 2009
title Crystal Structure Of The Wild-Type Restriction-Modification Protein C.Esp1396i
authors N.J.Ball, J.E.Mcgeehan, S.J.Thresh, S.D.Streeter, G.G.Kneale
compound source
Molecule: Regulatory Protein
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N
Engineered: Yes
Organism_scientific: Enterobacter Sp.
Organism_taxid: 211595
Strain: Rfl1396
Gene: Esp1396ic
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Gold
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28
symmetry Space Group: P 65
R_factor 0.237 R_Free 0.269
crystal
cell
length a length b length c angle alpha angle beta angle gamma
128.717 128.717 137.508 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.80 Å
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, N, K, E, B, H, M, C, D, I, G, L


Primary referenceStructure of the restriction-modification controller protein C.Esp1396I., Ball N, Streeter SD, Kneale GG, McGeehan JE, Acta Crystallogr D Biol Crystallogr. 2009 Sep;65(Pt 9):900-5. Epub 2009 Aug 6. PMID:19690367
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (177 Kb) [Save to disk]
  • Biological Unit Coordinates (3g5g.pdb1.gz) 25 Kb
  • Biological Unit Coordinates (3g5g.pdb2.gz) 26 Kb
  • Biological Unit Coordinates (3g5g.pdb3.gz) 26 Kb
  • Biological Unit Coordinates (3g5g.pdb4.gz) 26 Kb
  • Biological Unit Coordinates (3g5g.pdb5.gz) 26 Kb
  • Biological Unit Coordinates (3g5g.pdb6.gz) 26 Kb
  • Biological Unit Coordinates (3g5g.pdb7.gz) 26 Kb
  • CSU: Contacts of Structural Units for 3G5G
  • Structure Factors (499 Kb)
  • Retrieve 3G5G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3G5G from S2C, [Save to disk]
  • Re-refined 3g5g structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3G5G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3G5G
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3G5G, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3g5g_N] [3g5g_G] [3g5g_B] [3g5g_C] [3g5g_F] [3g5g_K] [3g5g_H] [3g5g_M] [3g5g_L] [3g5g_I] [3g5g_D] [3g5g_J] [3g5g] [3g5g_E] [3g5g_A]
  • SWISS-PROT database: [Q8GGH0]
  • Domain organization of [Q8GGH0_9ENTR] by SWISSPFAM
  • Domain found in 3G5G: [HTH_XRE ] by SMART
  • Other resources with information on 3G5G
  • Community annotation for 3G5G at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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