3G6H Transferase date Feb 06, 2009
title Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation
authors M.A.Seeliger, P.Ranjitkar, C.Kasap, Y.Shan, D.E.Shaw, N.P.Shah, J. D.J.Maly
compound source
Molecule: Proto-Oncogene Tyrosine-Protein Kinase Src
Chain: A, B
Fragment: Protein Kinase Domain
Synonym: Pp60c-Src, P60-Src, C-Src
Ec: 2.7.10.2
Engineered: Yes
Mutation: Yes
Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
Gene: Src
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21de3
symmetry Space Group: P 1
R_factor 0.225 R_Free 0.283
crystal
cell
length a length b length c angle alpha angle beta angle gamma
41.938 63.344 74.179 100.99 89.39 90.20
method X-Ray Diffractionresolution 2.35 Å
ligand G6H enzyme Transferase E.C.2.7.10.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceEqually potent inhibition of c-Src and Abl by compounds that recognize inactive kinase conformations., Seeliger MA, Ranjitkar P, Kasap C, Shan Y, Shaw DE, Shah NP, Kuriyan J, Maly DJ, Cancer Res. 2009 Mar 15;69(6):2384-92. Epub 2009 Mar 10. PMID:19276351
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (92 Kb) [Save to disk]
  • Biological Unit Coordinates (3g6h.pdb1.gz) 45 Kb
  • Biological Unit Coordinates (3g6h.pdb2.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 3G6H
  • CSU: Contacts of Structural Units for 3G6H
  • Likely Quarternary Molecular Structure file(s) for 3G6H
  • Structure Factors (419 Kb)
  • Retrieve 3G6H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3G6H from S2C, [Save to disk]
  • Re-refined 3g6h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3G6H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3G6H
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3G6H, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3g6h] [3g6h_B] [3g6h_A]
  • SWISS-PROT database: [P00523]
  • Domain organization of [SRC_CHICK] by SWISSPFAM
  • Domain found in 3G6H: [TyrKc ] by SMART
  • Other resources with information on 3G6H
  • Community annotation for 3G6H at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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