3G7F Photosynthesis date Feb 09, 2009
title Crystal Structure Of Blastochloris Viridis Heterodimer Mutan Center
authors N.S.Ponomarenko, L.Li, V.Tereshko, R.F.Ismagilov, J.R.Norris Jr.
compound source
Molecule: Photosynthetic Reaction Center Cytochrome C Subun
Chain: C
Synonym: Cytochrome C558c559
Organism_scientific: Blastochloris Viridis
Organism_taxid: 1079
Cellular_location: Membrane

Molecule: Photosynthetic Reaction Center H Subunit
Chain: H
Synonym: Reaction Center Protein H Chain

Organism_scientific: Blastochloris Viridis
Organism_taxid: 1079
Cellular_location: Membrane

Molecule: Photosynthetic Reaction Center L Subunit
Chain: L
Synonym: Reaction Center Protein L Chain

Organism_scientific: Blastochloris Viridis
Organism_taxid: 1079
Cellular_location: Membrane

Molecule: Photosynthetic Reaction Center M Subunit
Chain: M
Synonym: Reaction Center Protein M Chain

Organism_scientific: Blastochloris Viridis
Organism_taxid: 1079
Cellular_location: Membrane
symmetry Space Group: P 43 21 2
R_factor 0.176 R_Free 0.206
crystal
cell
length a length b length c angle alpha angle beta angle gamma
220.132 220.132 112.744 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand BCB, BPB, FE2, FME, HEC, HTO, LDA, MQ9, NS5, SO4, UQ1 enzyme
Gene
Ontology
ChainFunctionProcessComponent
C
  • electron transfer activity


  • H
  • electron transporter, transf...


  • L


    M


    Primary referenceStructural and spectropotentiometric analysis of Blastochloris viridis heterodimer mutant reaction center., Ponomarenko NS, Li L, Marino AR, Tereshko V, Ostafin A, Popova JA, Bylina EJ, Ismagilov RF, Norris JR Jr, Biochim Biophys Acta. 2009 Sep;1788(9):1822-31. Epub 2009 Jun 17. PMID:19539602
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (230 Kb) [Save to disk]
  • Biological Unit Coordinates (3g7f.pdb1.gz) 217 Kb
  • LPC: Ligand-Protein Contacts for 3G7F
  • CSU: Contacts of Structural Units for 3G7F
  • Structure Factors (1473 Kb)
  • Retrieve 3G7F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3G7F from S2C, [Save to disk]
  • Re-refined 3g7f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3G7F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3G7F
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3G7F, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3g7f_L] [3g7f_M] [3g7f] [3g7f_H] [3g7f_C]
  • SWISS-PROT database: [P07173] [P06008] [P06009] [P06010]
  • Domain organization of [CYCR_RHOVI] [RCEH_RHOVI] [RCEL_RHOVI] [RCEM_RHOVI] by SWISSPFAM
  • Other resources with information on 3G7F
  • Community annotation for 3G7F at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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