3GB8 Transport Protein date Feb 19, 2009
title Crystal Structure Of Crm1snurportin-1 Complex
authors X.Dong, A.Biswas, K.E.Suel, L.K.Jackson, R.Martinez, H.Gu, Y.M.Cho
compound source
Molecule: Exportin-1
Chain: A
Synonym: Exp1, Chromosome Region Maintenance 1 Protein Homo
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Crm1, Xpo1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgextev

Molecule: Snurportin-1
Chain: B
Synonym: Rna U Transporter 1
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rnut1, Snupn, Spn1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgextev
symmetry Space Group: P 64 2 2
R_factor 0.236 R_Free 0.267
crystal
cell
length a length b length c angle alpha angle beta angle gamma
250.400 250.400 190.400 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.90 Å
Gene
Ontology
ChainFunctionProcessComponent
A
  • protein binding
  • intracellular transport of v...

  • B


    Primary referenceStructural basis for leucine-rich nuclear export signal recognition by CRM1., Dong X, Biswas A, Suel KE, Jackson LK, Martinez R, Gu H, Chook YM, Nature. 2009 Apr 30;458(7242):1136-41. Epub 2009 Apr 1. PMID:19339969
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (200 Kb) [Save to disk]
  • Biological Unit Coordinates (3gb8.pdb1.gz) 193 Kb
  • CSU: Contacts of Structural Units for 3GB8
  • Likely Quarternary Molecular Structure file(s) for 3GB8
  • Structure Factors (3676 Kb)
  • Retrieve 3GB8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3GB8 from S2C, [Save to disk]
  • Re-refined 3gb8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3GB8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3GB8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3GB8, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3gb8_A] [3gb8] [3gb8_B]
  • SWISS-PROT database: [O95149] [O14980]
  • Belongs to the eukaryotic nuclear pore complex (e-npc) family according to TCDB.
  • Domain organization of [SPN1_HUMAN] [XPO1_HUMAN] by SWISSPFAM
  • Domains found in 3GB8: [CRM1_C] [IBN_N ] by SMART
  • Other resources with information on 3GB8
  • Community annotation for 3GB8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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