3GBP Periplasmic Binding Protein date Jan 25, 1990
title Structure Of The Periplasmic Glucosegalactose Receptor Of S Typhimurium
authors S.L.Mowbray
compound source
Molecule: Galactose-Binding Protein
Chain: A
Engineered: Yes
 Organism_scientific: Salmonella Typhimurium
Organism_taxid: 602
symmetry Space Group: C 1 2 1
R_factor 0.158 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
119.590 37.280 80.230 90.00 123.37 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand BGC, CA enzyme
note 3GBP supersedes 1GBP
related structures by homologous chain: 1GLG
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of the periplasmic glucose/galactose receptor of Salmonella typhimurium., Mowbray SL, Smith RD, Cole LB, Receptor 1990-91 Winter;1(1-2):41-53. PMID:1967096
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (66 Kb) [Save to disk]
  • Biological Unit Coordinates (3gbp.pdb1.gz) 62 Kb
  • LPC: Ligand-Protein Contacts for 3GBP
  • CSU: Contacts of Structural Units for 3GBP
  • Likely Quarternary Molecular Structure file(s) for 3GBP
  • Structure Factors (57 Kb)
  • Retrieve 3GBP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3GBP from S2C, [Save to disk]
  • Re-refined 3gbp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3GBP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3GBP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3GBP, from MSDmotif at EBI
  • Genome occurence of 3GBP's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d3gbp__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3gbp] [3gbp_A]
  • SWISS-PROT database: [P23905]
  • Domain organization of [DGAL_SALTY] by SWISSPFAM
    • Other resources with information on 3GBP
  • Community annotation for 3GBP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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