3GC7 Transferase date Feb 21, 2009
title The Structure Of P38alpha In Complex With A Dihydroquinazoli
authors G.Scapin, S.B.Patel
compound source
Molecule: Mitogen-Activated Protein Kinase 14
Chain: A
Synonym: Mitogen-Activated Protein Kinase P38 Alpha, Map Ki Alpha, Cytokine Suppressive Anti-Inflammatory Drug-Binding Csaid-Binding Protein, Csbp, Max-Interacting Protein 2, Map Mxi2, Sapk2a;
Ec: 2.7.11.24
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Csbp, Csbp1, Csbp2, Cspb1, Mapk14, Mk14-Human, Mxi2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 De3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: P 21 21 21
R_factor 0.180 R_Free 0.208
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.864 88.021 121.767 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand B45 BindingDB enzyme Transferase E.C.2.7.11.24 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe three-dimensional structure of MAP kinase p38beta: different features of the ATP-binding site in p38beta compared with p38alpha., Patel SB, Cameron PM, O'Keefe SJ, Frantz-Wattley B, Thompson J, O'Neill EA, Tennis T, Liu L, Becker JW, Scapin G, Acta Crystallogr D Biol Crystallogr. 2009 Aug;65(Pt 8):777-85. Epub 2009, Jul 10. PMID:19622861
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk]
  • Biological Unit Coordinates (3gc7.pdb1.gz) 66 Kb
  • LPC: Ligand-Protein Contacts for 3GC7
  • CSU: Contacts of Structural Units for 3GC7
  • Likely Quarternary Molecular Structure file(s) for 3GC7
  • Structure Factors (647 Kb)
  • Retrieve 3GC7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3GC7 from S2C, [Save to disk]
  • Re-refined 3gc7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3GC7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3GC7
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3GC7, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3gc7_A] [3gc7]
  • SWISS-PROT database: [Q16539]
  • Domain organization of [MK14_HUMAN] by SWISSPFAM
  • Domain found in 3GC7: [S_TKc ] by SMART
  • Other resources with information on 3GC7
  • Community annotation for 3GC7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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