3GC8 Transferase date Feb 21, 2009
title The Structure Of P38beta C162s In Complex With A Dihydroquin
authors G.Scapin, S.B.Patel
compound source
Molecule: Mitogen-Activated Protein Kinase 11
Chain: A, B
Synonym: Mitogen-Activated Protein Kinase P38 Beta, Map Kin Beta, P38b, P38-2, Stress-Activated Protein Kinase 2;
Ec: 2.7.11.24
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mapk11, Prkm11, Sapk2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 De3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: P 1 21 1
R_factor 0.208 R_Free 0.272
crystal
cell
length a length b length c angle alpha angle beta angle gamma
39.124 157.710 60.360 90.00 91.57 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand B45, NA, NI enzyme Transferase E.C.2.7.11.24 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe three-dimensional structure of MAP kinase p38beta: different features of the ATP-binding site in p38beta compared with p38alpha., Patel SB, Cameron PM, O'Keefe SJ, Frantz-Wattley B, Thompson J, O'Neill EA, Tennis T, Liu L, Becker JW, Scapin G, Acta Crystallogr D Biol Crystallogr. 2009 Aug;65(Pt 8):777-85. Epub 2009, Jul 10. PMID:19622861
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (121 Kb) [Save to disk]
  • Biological Unit Coordinates (3gc8.pdb1.gz) 58 Kb
  • Biological Unit Coordinates (3gc8.pdb2.gz) 58 Kb
  • LPC: Ligand-Protein Contacts for 3GC8
  • CSU: Contacts of Structural Units for 3GC8
  • Likely Quarternary Molecular Structure file(s) for 3GC8
  • Structure Factors (426 Kb)
  • Retrieve 3GC8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3GC8 from S2C, [Save to disk]
  • Re-refined 3gc8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3GC8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3GC8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3GC8, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3gc8] [3gc8_B] [3gc8_A]
  • SWISS-PROT database: [Q15759]
  • Domain organization of [MK11_HUMAN] by SWISSPFAM
  • Domain found in 3GC8: [S_TKc ] by SMART
  • Other resources with information on 3GC8
  • Community annotation for 3GC8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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