3GCI	Hydrolase	date	Feb 22, 2009
title	Crystal Structure Of The Complex Formed Between A New Isofor Phospholipase A2 With C-Terminal Amyloid Beta Heptapeptide Resolution
authors	Z.Mirza, G.Vikram, N.Singh, M.Sinha, A.Bhushan, S.Sharma, A.Sriniv P.Kaur, T.P.Singh
compound		source
Molecule: Phospholipase A2 Isoform 3 Chain: A Synonym: Phosphatidylcholine 2-Acylhydrolase Ec: 3.1.1.4		Organism_scientific: Naja Sagittifera Organism_common: Andaman Cobra Organism_taxid: 195058
Molecule: Heptapeptide From Amyloid Beta A4 Protein Chain: P Fragment: Unp Residues 707-713 Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Other_details: This Peptide Was Chemically Synthesized. Thi Sequence Occurs Naturally In Humans.
symmetry	Space Group: P 41	R_factor 0.184 R_Free 0.221
crystal cell	length a length b length c angle alpha angle beta angle gamma 42.679 42.679 65.817 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.04 Å
ligand	CA	enzyme	Hydrolase E.C.3.1.1.4 BRENDA
Gene Ontology	Chain Function Process Component A

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (26 Kb) [Save to disk] Biological Unit Coordinates (3gci.pdb1.gz) 21 Kb LPC: Ligand-Protein Contacts for 3GCI CSU: Contacts of Structural Units for 3GCI Likely Quarternary Molecular Structure file(s) for 3GCI Structure Factors (99 Kb) Retrieve 3GCI in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3GCI from S2C, [Save to disk] Re-refined 3gci structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3GCI in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3GCI

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3GCI, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3gci] [3gci_P] [3gci_A] SWISS-PROT database: [P05067] [P60045] Belongs to the amyloid β-protein peptide (aβpp) family according to TCDB. Domain organization of [A4_HUMAN] [PA23_NAJSG] by SWISSPFAM Domain found in 3GCI: [PA2c ] by SMART

Other resources with information on 3GCI

Community annotation for 3GCI at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---