3GCN Hydrolase Hydrolase Activator date Feb 22, 2009
title Crystal Structure Of Degs H198pd320a Mutant Modified By Dfp Complex With Omp Peptide (Yqf)
authors J.Sohn, R.T.Sauer, R.A.Grant
compound source
Molecule: Protease Degs
Chain: A
Ec: 3.4.21.-
Engineered: Yes
Mutation: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K-12
Gene: B3235, Degs, Hhob, Htrh, Jw3204
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21b

Molecule: Yqf Peptide
Chain: B
Engineered: Yes

Synthetic: Yes
symmetry Space Group: P 21 3
R_factor 0.213 R_Free 0.249
crystal
cell
length a length b length c angle alpha angle beta angle gamma
119.030 119.030 119.030 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand MIS enzyme Hydrolase E.C.3.4.21 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • Biological Unit Coordinates (3gcn.pdb1.gz) 46 Kb
  • LPC: Ligand-Protein Contacts for 3GCN
  • CSU: Contacts of Structural Units for 3GCN
  • Likely Quarternary Molecular Structure file(s) for 3GCN
  • Structure Factors (87 Kb)
  • Retrieve 3GCN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3GCN from S2C, [Save to disk]
  • Re-refined 3gcn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3GCN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3GCN
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3GCN, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3gcn_A] [3gcn_B] [3gcn]
  • SWISS-PROT database: [P0AEE3]
  • Domain organization of [DEGS_ECOLI] by SWISSPFAM
  • Domain found in 3GCN: [PDZ ] by SMART
  • Other resources with information on 3GCN
  • Community annotation for 3GCN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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