3GD7 Hydrolase date Feb 23, 2009
title Crystal Structure Of Human Nbd2 Complexed With N6-Phenylethy Atp)
authors S.Atwell, S.Antonysamy, K.Conners, S.Emtage, T.Gheyi, H.A.Lewis, F J.M.Sauder, S.R.Wasserman, X.Zhao
compound source
Molecule: Fusion Complex Of Cystic Fibrosis Transmembrane C Regulator, Residues 1193-1427 And Maltosemaltodextrin Impo Binding Protein Malk, Residues 219-371;
Chain: A, B, C, D
Synonym: Cftr, Camp-Dependent Chloride Channel, Atp-Binding Transporter Sub-Family C Member 7;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens, Escherichia Coli K-12
Organism_common: Human,Bacteria
Organism_taxid: 9606, 83333
Gene: Cftr,Malk
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Ril With Chaperone Coexp
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet26
symmetry Space Group: P 21 21 2
R_factor 0.247 R_Free 0.308
crystal
cell
length a length b length c angle alpha angle beta angle gamma
137.837 173.725 82.574 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand B44 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (241 Kb) [Save to disk]
  • Biological Unit Coordinates (3gd7.pdb1.gz) 61 Kb
  • Biological Unit Coordinates (3gd7.pdb2.gz) 63 Kb
  • Biological Unit Coordinates (3gd7.pdb3.gz) 63 Kb
  • Biological Unit Coordinates (3gd7.pdb4.gz) 61 Kb
  • Biological Unit Coordinates (3gd7.pdb5.gz) 234 Kb
  • LPC: Ligand-Protein Contacts for 3GD7
  • CSU: Contacts of Structural Units for 3GD7
  • Structure Factors (410 Kb)
  • Retrieve 3GD7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3GD7 from S2C, [Save to disk]
  • Re-refined 3gd7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3GD7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3GD7
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3GD7, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3gd7] [3gd7_D] [3gd7_C] [3gd7_A] [3gd7_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3GD7: [AAA ] by SMART
  • Other resources with information on 3GD7
  • Community annotation for 3GD7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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