3GE4 Dna Binding Protein date Feb 25, 2009
title Crystal Structure Of Ferritin:Dna-Binding Protein Dps From B Melitensis
authors Seattle Structural Genomics Center For Infectious Disease (S
compound source
Molecule: Dna Protection During Starvation Protein
Chain: A, B, C, D, E, F, G, H, I, J, K, L
Engineered: Yes
 Organism_scientific: Brucella Melitensis
Organism_taxid: 29459
Strain: 1719b
Gene: Bmei1980
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ava0421
symmetry Space Group: P 1 21 1
R_factor 0.143 R_Free 0.179
crystal
cell
length a length b length c angle alpha angle beta angle gamma
95.240 98.330 105.450 90.00 89.98 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand CA enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, K, E, B, H, C, D, I, G, L


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (346 Kb) [Save to disk]
  • Biological Unit Coordinates (3ge4.pdb1.gz) 338 Kb
  • LPC: Ligand-Protein Contacts for 3GE4
  • CSU: Contacts of Structural Units for 3GE4
  • Likely Quarternary Molecular Structure file(s) for 3GE4
  • Structure Factors (3181 Kb)
  • Retrieve 3GE4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3GE4 from S2C, [Save to disk]
  • Re-refined 3ge4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3GE4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3GE4
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3GE4, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ge4_K] [3ge4_L] [3ge4] [3ge4_F] [3ge4_D] [3ge4_B] [3ge4_A] [3ge4_I] [3ge4_H] [3ge4_E] [3ge4_G] [3ge4_J] [3ge4_C]
  • SWISS-PROT database: [Q8YE98]
  • Domain organization of [Q8YE98_BRUME] by SWISSPFAM
    • Other resources with information on 3GE4
  • Community annotation for 3GE4 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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