3GHZ	Lyase	date	Mar 04, 2009
title	2-C-Methyl-D-Erythritol 2,4-Cyclodiphosphate Synthase From S Typhimurium
authors	J.Osipiuk, M.Gu, S.Peterson, W.F.Anderson, A.Joachimiak, Center F Structural Genomics Of Infectious Diseases (Csgid)
compound		source
Molecule: 2-C-Methyl-D-Erythritol 2,4-Cyclodiphosphate Synt Chain: A, B, C Synonym: Mecps, Mecdp-Synthase Ec: 4.6.1.12 Engineered: Yes		Organism_scientific: Salmonella Typhimurium Organism_taxid: 602 Strain: Lt2 Gene: Ispf, Stm2929 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)Magic Expression_system_vector_type: Plasmid Expression_system_plasmid: Pmcsg7
symmetry	Space Group: I 2 3	R_factor 0.166 R_Free 0.205
crystal cell	length a length b length c angle alpha angle beta angle gamma 143.974 143.974 143.974 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.03 Å
ligand	GOL, MG, POP	enzyme	Lyase E.C.4.6.1.12 BRENDA
Gene Ontology	Chain Function Process Component A, C, B

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (83 Kb) [Save to disk] Biological Unit Coordinates (3ghz.pdb1.gz) 76 Kb LPC: Ligand-Protein Contacts for 3GHZ CSU: Contacts of Structural Units for 3GHZ Likely Quarternary Molecular Structure file(s) for 3GHZ Structure Factors (433 Kb) Retrieve 3GHZ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3GHZ from S2C, [Save to disk] Re-refined 3ghz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3GHZ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3GHZ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3GHZ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3ghz_C] [3ghz_A] [3ghz_B] [3ghz] SWISS-PROT database: [Q8ZMF7] Domain organization of [ISPF_SALTY] by SWISSPFAM

Other resources with information on 3GHZ

Community annotation for 3GHZ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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