3GI3	Transferase	date	Mar 05, 2009
title	Crystal Structure Of A N-Phenyl-N'-Naphthylurea Analog In Co P38 Map Kinase
authors	K.C.Qian
compound		source
Molecule: Mitogen-Activated Protein Kinase 14 Chain: A Synonym: Mitogen-Activated Protein Kinase P38 Alpha, Map Ki Alpha, Cytokine Suppressive Anti-Inflammatory Drug-Binding Csaid-Binding Protein, Csbp, Max-Interacting Protein 2, Map Mxi2, Sapk2a; Ec: 2.7.11.24 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Mapk14, Csbp, Csbp1, Csbp2, Cspb1, Mxi2 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 (De3)
symmetry	Space Group: P 21 21 21	R_factor 0.230 R_Free 0.290
crystal cell	length a length b length c angle alpha angle beta angle gamma 65.010 74.140 74.400 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	B10	enzyme	Transferase E.C.2.7.11.24 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Discovery and characterization of the N-phenyl-N'-naphthylurea class of p38 kinase inhibitors., Cirillo PF, Hickey ER, Moss N, Breitfelder S, Betageri R, Fadra T, Gaenzler F, Gilmore T, Goldberg DR, Kamhi V, Kirrane T, Kroe RR, Madwed J, Moriak M, Netherton M, Pargellis CA, Patel UR, Qian KC, Sharma R, Sun S, Swinamer A, Torcellini C, Takahashi H, Tsang M, Xiong Z, Bioorg Med Chem Lett. 2009 May 1;19(9):2386-91. Epub 2009 Mar 26. PMID:19356929

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk] Biological Unit Coordinates (3gi3.pdb1.gz) 58 Kb LPC: Ligand-Protein Contacts for 3GI3 CSU: Contacts of Structural Units for 3GI3 Structure Factors (204 Kb) Retrieve 3GI3 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3GI3 from S2C, [Save to disk] Re-refined 3gi3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3GI3 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3GI3

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3GI3, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3gi3] [3gi3_A] SWISS-PROT database: [Q16539] Domain organization of [MK14_HUMAN] by SWISSPFAM Domain found in 3GI3: [S_TKc ] by SMART

Other resources with information on 3GI3

Community annotation for 3GI3 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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