3GIA Transport Protein date Mar 05, 2009
title Crystal Structure Of Apct Transporter
authors P.L.Shaffer, A.S.Goehring, A.Shankaranarayanan, E.Gouaux, New Yo Consortium On Membrane Protein Structure (Nycomps)
compound source
Molecule: Uncharacterized Protein Mj0609
Chain: A
Engineered: Yes
Organism_scientific: Methanocaldococcus Jannaschii
Organism_common: Methanococcus Jannaschii
Organism_taxid: 2190
Gene: Mj0609
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: C41(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet25b
symmetry Space Group: C 1 2 1
R_factor 0.203 R_Free 0.233
crystal
cell
length a length b length c angle alpha angle beta angle gamma
113.482 99.499 72.693 90.00 117.71 90.00
method X-Ray Diffractionresolution 2.32 Å
ligand BCN, D10 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure and Mechanism of a Na+ Independent Amino Acid Transporter., Shaffer PL, Goehring A, Shankaranarayanan A, Gouaux E, Science. 2009 Jul 22. PMID:19608859
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (76 Kb) [Save to disk]
  • Biological Unit Coordinates (3gia.pdb1.gz) 70 Kb
  • LPC: Ligand-Protein Contacts for 3GIA
  • CSU: Contacts of Structural Units for 3GIA
  • Structure Factors (235 Kb)
  • Retrieve 3GIA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3GIA from S2C, [Save to disk]
  • Re-refined 3gia structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3GIA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3GIA
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3GIA, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3gia_A] [3gia]
  • SWISS-PROT database: [Q58026]
  • Belongs to the amino acid-polyamine-organocation (apc) family according to TCDB.
  • Domain organization of [Y609_METJA] by SWISSPFAM
  • Other resources with information on 3GIA
  • Community annotation for 3GIA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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