3GJ0 Transport Protein date Mar 07, 2009
title Crystal Structure Of Human Rangdp
authors J.R.Partridge, T.U.Schwartz
compound source
Molecule: Gtp-Binding Nuclear Protein Ran
Chain: A, B
Synonym: Gtpase Ran, Ras-Related Nuclear Protein, Ras-Like Tc4, Androgen Receptor-Associated Protein 24;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ara24, Oksw-Cl.81, Ran
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)-Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: P 41 21 2
R_factor 0.180 R_Free 0.203
crystal
cell
length a length b length c angle alpha angle beta angle gamma
81.544 81.544 130.567 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.48 Å
ligand GDP, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • intracellular transport of v...

  • Primary referenceCrystallographic and biochemical analysis of the Ran-binding zinc finger domain., Partridge JR, Schwartz TU, J Mol Biol. 2009 Aug 14;391(2):375-89. Epub 2009 Jun 6. PMID:19505478
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (156 Kb) [Save to disk]
  • Biological Unit Coordinates (3gj0.pdb1.gz) 78 Kb
  • Biological Unit Coordinates (3gj0.pdb2.gz) 74 Kb
  • LPC: Ligand-Protein Contacts for 3GJ0
  • CSU: Contacts of Structural Units for 3GJ0
  • Structure Factors (508 Kb)
  • Retrieve 3GJ0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3GJ0 from S2C, [Save to disk]
  • Re-refined 3gj0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3GJ0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3GJ0
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3GJ0, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3gj0] [3gj0_A] [3gj0_B]
  • SWISS-PROT database: [P62826]
  • Belongs to the small nuclear rna exporter (snrna-e) according to TCDB.
  • Domain organization of [RAN_HUMAN] by SWISSPFAM
  • Domains found in 3GJ0: [RAN] [small_GTPase ] by SMART
  • Other resources with information on 3GJ0
  • Community annotation for 3GJ0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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