3GJ3	Transport Protein	date	Mar 07, 2009
title	Crystal Structure Of Human Rangdp-Nup153znf2 Complex
authors	J.R.Partridge, T.U.Schwartz
compound		source
Molecule: Gtp-Binding Nuclear Protein Ran Chain: A Synonym: Gtpase Ran, Ras-Related Nuclear Protein, Ras-Like Tc4, Androgen Receptor-Associated Protein 24; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ran, Ara24, Oksw-Cl.81 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_variant: Bl21(De3)-Ril Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28a
Molecule: Nuclear Pore Complex Protein Nup153 Chain: B Fragment: Nup153 - Zinc Finger Module 2: Unp Residues 723-7 Synonym: Nucleoporin Nup153, 153 Kda Nucleoporin Engineered: Yes		Organism_scientific: Rattus Norvegicus Organism_common: Rat Organism_taxid: 10116 Gene: Nup153 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_variant: Bl21(De3)-Ril Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex-6p1
symmetry	Space Group: P 21 21 2	R_factor 0.161 R_Free 0.194
crystal cell	length a length b length c angle alpha angle beta angle gamma 59.709 80.236 57.960 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.79 Å
ligand	GDP, MG, ZN	enzyme
note	3GJ3 is a representative structure
Gene Ontology	Chain Function Process Component A intracellular transport of v...
Primary reference	Crystallographic and biochemical analysis of the Ran-binding zinc finger domain., Partridge JR, Schwartz TU, J Mol Biol. 2009 Aug 14;391(2):375-89. Epub 2009 Jun 6. PMID:19505478

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (91 Kb) [Save to disk] Biological Unit Coordinates (3gj3.pdb1.gz) 86 Kb LPC: Ligand-Protein Contacts for 3GJ3 CSU: Contacts of Structural Units for 3GJ3 Structure Factors (191 Kb) Retrieve 3GJ3 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3GJ3 from S2C, [Save to disk] Re-refined 3gj3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3GJ3 in 3D

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Visual 3D analysis of 3GJ3

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3GJ3, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3gj3_B] [3gj3] [3gj3_A] SWISS-PROT database: [P49791] [P62826] Belongs to the small nuclear rna exporter (snrna-e) according to TCDB. Domain organization of [NU153_RAT] [RAN_HUMAN] by SWISSPFAM Domains found in 3GJ3: [RAN] [ZnF_RBZ] [small_GTPase ] by SMART

Other resources with information on 3GJ3

Community annotation for 3GJ3 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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