3GKU Rna Binding Protein date Mar 11, 2009
title Crystal Structure Of A Probable Rna-Binding Protein From Clo Symbiosum Atcc 14940
authors K.Tan, L.Keigher, R.Jedrzejczak, G.Babnigg, A.Joachimiak, Midwest For Structural Genomics (Mcsg)
compound source
Molecule: Probable Rna-Binding Protein
Chain: A, B, C
Engineered: Yes
Organism_scientific: Clostridium Symbiosum Atcc 14940
Organism_taxid: 411472
Atcc: 14940
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Prk1037
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg19
symmetry Space Group: P 31 2 1
R_factor 0.220 R_Free 0.287
crystal
cell
length a length b length c angle alpha angle beta angle gamma
126.992 126.992 106.185 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.95 Å
ligand MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk]
  • Biological Unit Coordinates (3gku.pdb1.gz) 64 Kb
  • Biological Unit Coordinates (3gku.pdb2.gz) 41 Kb
  • LPC: Ligand-Protein Contacts for 3GKU
  • CSU: Contacts of Structural Units for 3GKU
  • Likely Quarternary Molecular Structure file(s) for 3GKU
  • Structure Factors (319 Kb)
  • Retrieve 3GKU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3GKU from S2C, [Save to disk]
  • Re-refined 3gku structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3GKU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3GKU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3GKU, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3gku_B] [3gku_A] [3gku_C] [3gku]
  • SWISS-PROT database: [D0VX24]
  • Domain organization of [D0VX24_CLOSY] by SWISSPFAM
  • Domains found in 3GKU: [Jag_N] [KH] [R3H ] by SMART
  • Other resources with information on 3GKU
  • Community annotation for 3GKU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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