3GNP	Hydrolase	date	Mar 17, 2009
title	Crystal Structure Of A Rice Os3bglu6 Beta-Glucosidase With O D-Thio-Glucoside
authors	S.Seshadri, T.Akiyama, R.Opassiri, B.Kuaprasert, J.R.K.Cairns
compound		source
Molecule: Os03g0212800 Protein Chain: A Fragment: Unp Residues 38-521 Synonym: Beta-Glucosidase, Glycosyl Hydrolase Family 1 Prot Expressed; Ec: 3.2.1.21 Engineered: Yes		Organism_scientific: Oryza Sativa Subsp. Japonica Organism_common: Rice Organism_taxid: 39947 Gene: Loc_os03g11420, Os03g0212800, Os3bglu6 Locus Id: Os03 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Origami(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet32a+Dest
symmetry	Space Group: P 21 21 21	R_factor 0.178 R_Free 0.207
crystal cell	length a length b length c angle alpha angle beta angle gamma 57.185 91.093 111.359 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	GOL, SOG	enzyme	Hydrolase E.C.3.2.1.21 BRENDA
Gene	LOC
Gene Ontology	Chain Function Process Component A
Primary reference	Structural and enzymatic characterization of Os3BGlu6, a rice {beta}-glucosidase hydrolyzing hydrophobic glycosides and (1->3)- and (1->2)-linked disaccharides., Seshadri S, Akiyama T, Opassiri R, Kuaprasert B, Cairns JK, Plant Physiol. 2009 Jul 8. PMID:19587102

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk] Biological Unit Coordinates (3gnp.pdb1.gz) 83 Kb LPC: Ligand-Protein Contacts for 3GNP CSU: Contacts of Structural Units for 3GNP Likely Quarternary Molecular Structure file(s) for 3GNP Structure Factors (780 Kb) Retrieve 3GNP in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3GNP from S2C, [Save to disk] Re-refined 3gnp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3GNP in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3GNP

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3GNP, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3gnp_A] [3gnp] SWISS-PROT database: [Q8L7J2] Domain organization of [BGL06_ORYSJ] by SWISSPFAM

Other resources with information on 3GNP

Community annotation for 3GNP at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---