3GP6	Transferase	date	Mar 20, 2009
title	Crystal Structure Of Pagp In Sdsmpd
authors	J.A.Cuesta-Seijo, G.G.Prive
compound		source
Molecule: Protein Pagp Chain: A Synonym: Protein Crca Engineered: Yes		Organism_scientific: Escherichia Coli Organism_taxid: 83333 Gene: B0622, Crca, Jw0617, Ybeg Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet21(A)
symmetry	Space Group: P 62 2 2	R_factor 0.171 R_Free 0.208
crystal cell	length a length b length c angle alpha angle beta angle gamma 113.228 113.228 55.064 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.40 Å
ligand	LI, MPD, MRD, SDS, SO4	enzyme
note	3GP6 is a representative structure
Gene Ontology	Chain Function Process Component A
Primary reference	PagP crystallized from SDS/cosolvent reveals the route for phospholipid access to the hydrocarbon ruler., Cuesta-Seijo JA, Neale C, Khan MA, Moktar J, Tran CD, Bishop RE, Pomes R, Prive GG, Structure. 2010 Sep 8;18(9):1210-9. PMID:20826347

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk] Biological Unit Coordinates (3gp6.pdb1.gz) 64 Kb LPC: Ligand-Protein Contacts for 3GP6 CSU: Contacts of Structural Units for 3GP6 Structure Factors (598 Kb) Retrieve 3GP6 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3GP6 from S2C, [Save to disk] Re-refined 3gp6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3GP6 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3GP6

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3GP6, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3gp6_A] [3gp6] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3GP6

Community annotation for 3GP6 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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