3GQB Hydrolase date Mar 24, 2009
title Crystal Structure Of The A3b3 Complex From V-Atpase
authors M.Meher, S.Akimoto, M.Iwata, K.Nagata, Y.Hori, M.Yoshida, S.Yokoya S.Iwata, K.Yokoyama
compound source
Molecule: V-Type Atp Synthase Alpha Chain
Chain: A, C
Synonym: V-Atpase Subunit A
Ec: 3.6.3.14
Engineered: Yes
Mutation: Yes
Organism_scientific: Thermus Thermophilus Hb8
Organism_taxid: 300852
Gene: Atpa, Ttha1273
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: V-Type Atp Synthase Beta Chain
Chain: B, D
Synonym: V-Atpase Subunit B
Engineered: Yes
Mutation: Yes

Organism_scientific: Thermus Thermophilus Hb8
Organism_taxid: 300852
Gene: Atpb, Ttha1272
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 3 2 1
R_factor 0.250 R_Free 0.281
crystal
cell
length a length b length c angle alpha angle beta angle gamma
199.368 199.368 179.005 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.80 Å
ligand
enzyme Hydrolase E.C.3.6.3.14 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C


D, B


Primary referenceCrystal structure of A(3)B(3) complex of V-ATPase from Thermus thermophilus., Maher MJ, Akimoto S, Iwata M, Nagata K, Hori Y, Yoshida M, Yokoyama S, Iwata S, Yokoyama K, EMBO J. 2009 Nov 5. PMID:19893485
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (338 Kb) [Save to disk]
  • Biological Unit Coordinates (3gqb.pdb1.gz) 168 Kb
  • Biological Unit Coordinates (3gqb.pdb2.gz) 168 Kb
  • CSU: Contacts of Structural Units for 3GQB
  • Structure Factors (1369 Kb)
  • Retrieve 3GQB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3GQB from S2C, [Save to disk]
  • Re-refined 3gqb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3GQB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3GQB
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3GQB, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3gqb_D] [3gqb_B] [3gqb] [3gqb_A] [3gqb_C]
  • SWISS-PROT database: [Q56403] [Q56404]
  • Domain organization of [VATA_THET8] [VATB_THET8] by SWISSPFAM
  • Other resources with information on 3GQB
  • Community annotation for 3GQB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science