3GQF	Oxidoreductase	date	Mar 24, 2009
title	Structural And Biophysical Properties Of The Pathogenic Sod1 H46rh48q
authors	D.D.Winkler, J.P.Schuermann, P.J.Hart
compound		source
Molecule: Superoxide Dismutase [Cu-Zn] Chain: A, B, C, D, E, F Ec: 1.15.1.1 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Sod1 Expression_system: Saccharomyces Cerevisiae Expression_system_taxid: 4932 Expression_system_strain: Eg118 Expression_system_vector_type: Plasmid Expression_system_plasmid: Yep351
symmetry	Space Group: C 2 2 21	R_factor 0.205 R_Free 0.242
crystal cell	length a length b length c angle alpha angle beta angle gamma 112.576 194.331 143.179 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.20 Å
ligand	CA, ZN	enzyme	Oxidoreductase E.C.1.15.1.1 BRENDA
Gene Ontology	Chain Function Process Component F, A, D, C, E, B superoxide dismutase activit... protein binding anterograde axonal transport... retrograde axonal transport
Primary reference	Structural and biophysical properties of the pathogenic SOD1 variant H46R/H48Q., Winkler DD, Schuermann JP, Cao X, Holloway SP, Borchelt DR, Carroll MC, Proescher JB, Culotta VC, Hart PJ, Biochemistry. 2009 Apr 21;48(15):3436-47. PMID:19227972

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (146 Kb) [Save to disk] Biological Unit Coordinates (3gqf.pdb1.gz) 49 Kb Biological Unit Coordinates (3gqf.pdb2.gz) 48 Kb Biological Unit Coordinates (3gqf.pdb3.gz) 49 Kb LPC: Ligand-Protein Contacts for 3GQF CSU: Contacts of Structural Units for 3GQF Likely Quarternary Molecular Structure file(s) for 3GQF Structure Factors (1283 Kb) Retrieve 3GQF in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3GQF from S2C, [Save to disk] Re-refined 3gqf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3GQF in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3GQF

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3GQF, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3gqf] [3gqf_C] [3gqf_D] [3gqf_A] [3gqf_E] [3gqf_B] [3gqf_F] SWISS-PROT database: [P00441] Domain organization of [SODC_HUMAN] by SWISSPFAM

Other resources with information on 3GQF

Community annotation for 3GQF at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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