3GQI	Transferase Transferase Inhibitor	date	Mar 24, 2009
title	Crystal Structure Of Activated Receptor Tyrosine Kinase In C With Substrates
authors	J.H.Bae, E.D.Lew, S.Yuzawa, F.Tome, I.Lax, J.Schlessinger
compound		source
Molecule: Basic Fibroblast Growth Factor Receptor 1 Chain: A Fragment: Protein Kinase Domain Synonym: Fgfr-1, Bfgf-R, Fms-Like Tyrosine Kinase 2, C-Fgr Ec: 2.7.10.1 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Fgfbr, Fgfr1, Flg, Flt2 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Phospholipase C-Gamma-1 Chain: B Fragment: Tandem Sh2 Domains Synonym: 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodie Gamma-1, Phosphoinositide Phospholipase C, Plc-Gamma-1, Plc 148; Ec: 3.1.4.11 Engineered: Yes		Organism_scientific: Rattus Norvegicus Organism_common: Rat Organism_taxid: 10116 Gene: Plcg1 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: C 1 2 1	R_factor 0.249 R_Free 0.289
crystal cell	length a length b length c angle alpha angle beta angle gamma 133.935 64.596 94.209 90.00 96.50 90.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand	ACP, DVT, MG, PTR	enzyme	Transferase E.C.2.7.10.1 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	The selectivity of receptor tyrosine kinase signaling is controlled by a secondary SH2 domain binding site., Bae JH, Lew ED, Yuzawa S, Tome F, Lax I, Schlessinger J, Cell. 2009 Aug 7;138(3):514-24. PMID:19665973

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (94 Kb) [Save to disk] Biological Unit Coordinates (3gqi.pdb1.gz) 88 Kb LPC: Ligand-Protein Contacts for 3GQI CSU: Contacts of Structural Units for 3GQI Structure Factors (202 Kb) Retrieve 3GQI in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3GQI from S2C, [Save to disk] Re-refined 3gqi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3GQI in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3GQI

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3GQI, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3gqi_B] [3gqi] [3gqi_A] SWISS-PROT database: [P11362] [P10686] Belongs to the basigin (basigin) family according to TCDB. Domain organization of [FGFR1_HUMAN] [PLCG1_RAT] by SWISSPFAM Domains found in 3GQI: [SH2] [TyrKc ] by SMART

Other resources with information on 3GQI

Community annotation for 3GQI at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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