3GTA Apoptosis date Mar 27, 2009
title Structure Of An Ml-Iapxiap Chimera Bound To A Peptidomimeti
authors M.C.Franklin, W.J.Fairbrother, F.Cohen
compound source
Molecule: Baculoviral Iap Repeat-Containing 7
Chain: A, B
Fragment: Ml-Iap Residues 63-172
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Birc7
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: P 41 21 2
R_factor 0.152 R_Free 0.169
crystal
cell
length a length b length c angle alpha angle beta angle gamma
87.480 87.480 74.027 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand 851, BTB, EDO, LI, ZN BindingDB enzyme
Primary referenceAntagonists of inhibitor of apoptosis proteins based on thiazole amide isosteres., Cohen F, Koehler MF, Bergeron P, Elliott LO, Flygare JA, Franklin MC, Gazzard L, Keteltas SF, Lau K, Ly CQ, Tsui V, Fairbrother WJ, Bioorg Med Chem Lett. 2010 Feb 8. PMID:20189383
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (3gta.pdb1.gz) 19 Kb
  • Biological Unit Coordinates (3gta.pdb2.gz) 20 Kb
  • LPC: Ligand-Protein Contacts for 3GTA
  • CSU: Contacts of Structural Units for 3GTA
  • Structure Factors (238 Kb)
  • Retrieve 3GTA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3GTA from S2C, [Save to disk]
  • Re-refined 3gta structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3GTA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3GTA
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3GTA, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3gta_B] [3gta_A] [3gta]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3GTA: [BIR ] by SMART
  • Other resources with information on 3GTA
  • Community annotation for 3GTA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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