3GTD	Lyase	date	Mar 27, 2009
title	2.4 Angstrom Crystal Structure Of Fumarate Hydratase From Ri Prowazekii
authors	Seattle Structural Genomics Center For Infectious Disease (S
compound		source
Molecule: Fumarate Hydratase Class II Chain: A, B Synonym: Fumarase C Ec: 4.2.1.2 Engineered: Yes		Organism_scientific: Rickettsia Prowazekii Organism_taxid: 272947 Strain: Madrid-E Gene: Fumc, Rp665 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Ava0421
symmetry	Space Group: P 31 2 1	R_factor 0.193 R_Free 0.226
crystal cell	length a length b length c angle alpha angle beta angle gamma 144.900 144.900 106.210 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	MLI, NA	enzyme	Lyase E.C.4.2.1.2 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structure of fumarate hydratase from Rickettsia prowazekii, the agent of typhus and suspected relative of the mitochondria., Phan I, Subramanian S, Olsen C, Edwards TE, Guo W, Zhang Y, Van Voorhis WC, Stewart LJ, Myler PJ, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2011 Sep 1;67(Pt, 9):1123-8. Epub 2011 Aug 16. PMID:21904061

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (139 Kb) [Save to disk] Biological Unit Coordinates (3gtd.pdb1.gz) 262 Kb LPC: Ligand-Protein Contacts for 3GTD CSU: Contacts of Structural Units for 3GTD Likely Quarternary Molecular Structure file(s) for 3GTD Structure Factors (750 Kb) Retrieve 3GTD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3GTD from S2C, [Save to disk] Re-refined 3gtd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3GTD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3GTD

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3GTD, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3gtd_A] [3gtd_B] [3gtd] SWISS-PROT database: [Q9ZCQ4] Domain organization of [FUMC_RICPR] by SWISSPFAM

Other resources with information on 3GTD

Community annotation for 3GTD at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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