3GV4	Hydrolase	date	Mar 30, 2009
title	Crystal Structure Of Human Hdac6 Zinc Finger Domain And Ubiq Terminal Peptide Rlrgg
authors	A.Dong, M.Ravichandran, P.Loppnau, Y.Li, F.Mackenzie, I.Kozieradz A.M.Edwards, C.H.Arrowsmith, J.Weigelt, C.Bountra, A.Bochkarev, Paganon, J.Min, H.Ouyang, Structural Genomics Consortium (Sgc)
compound		source
Molecule: Histone Deacetylase 6 Chain: A Fragment: Unp Residues 1109-1215 Synonym: Hd6 Ec: 3.5.1.98 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hdac6, Kiaa0901, Jm21 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: P28a-Lic
Molecule: Ubiquitin C-Terminal Peptide Rlrgg Chain: H Engineered: Yes		Synthetic: Yes Other_details: Ubiquitin C-Terminal Peptide
symmetry	Space Group: P 21 21 21	R_factor 0.174 R_Free 0.230
crystal cell	length a length b length c angle alpha angle beta angle gamma 31.657 36.093 88.998 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.72 Å
ligand	CA, ZN	enzyme	Hydrolase E.C.3.5.1.98 BRENDA
Gene Ontology	Chain Function Process Component A

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (25 Kb) [Save to disk] Biological Unit Coordinates (3gv4.pdb1.gz) 21 Kb LPC: Ligand-Protein Contacts for 3GV4 CSU: Contacts of Structural Units for 3GV4 Likely Quarternary Molecular Structure file(s) for 3GV4 Structure Factors (153 Kb) Retrieve 3GV4 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3GV4 from S2C, [Save to disk] Re-refined 3gv4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3GV4 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3GV4

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3GV4, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3gv4_H] [3gv4_A] [3gv4] SWISS-PROT database: [Q9UBN7] Domain organization of [HDAC6_HUMAN] by SWISSPFAM Domain found in 3GV4: [ZnF_UBP ] by SMART

Other resources with information on 3GV4

Community annotation for 3GV4 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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