3GV7 Transferase Dna date Mar 30, 2009
title Human Dna Polymerase Iota In Complex With T Template Dna And Dttp
authors K.N.Kirouac, H.Ling
compound source
Molecule: Dna Polymerase Iota
Chain: B
Synonym: Rad30 Homolog B, Eta2
Ec: 2.7.7.7
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Poli, Rad30b
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgst-Parrallel1

Molecule: 5'-D(Paptpgpgpgptpcpcpt)-3'
Chain: T
Engineered: Yes

Synthetic: Yes

Molecule: 5'-D(Apgpgpapcpcpc)-3'
Chain: P
Engineered: Yes

Synthetic: Yes
symmetry Space Group: P 65 2 2
R_factor 0.209 R_Free 0.258
crystal
cell
length a length b length c angle alpha angle beta angle gamma
97.190 97.190 201.940 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.20 Å
ligand MG, TTP enzyme Transferase E.C.2.7.7.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
B


Primary referenceStructural basis of error-prone replication and stalling at a thymine base by human DNA polymerase iota., Kirouac KN, Ling H, EMBO J. 2009 May 14. PMID:19440206
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (78 Kb) [Save to disk]
  • Biological Unit Coordinates (3gv7.pdb1.gz) 71 Kb
  • LPC: Ligand-Protein Contacts for 3GV7
  • CSU: Contacts of Structural Units for 3GV7
  • Likely Quarternary Molecular Structure file(s) for 3GV7
  • Structure Factors (428 Kb)
  • Retrieve 3GV7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3GV7 from S2C, [Save to disk]
  • Re-refined 3gv7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3GV7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3GV7
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3GV7, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3gv7_B] [3gv7_P] [3gv7] [3gv7_T]
  • SWISS-PROT database: [Q9UNA4]
  • Domain organization of [POLI_HUMAN] by SWISSPFAM
  • Other resources with information on 3GV7
  • Community annotation for 3GV7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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