3GVG	Isomerase	date	Mar 31, 2009
title	Crystal Structure Of Triosephosphate Isomerase From Mycobact Tuberculosis
authors	Seattle Structural Genomics Center For Infectious Disease (S
compound		source
Molecule: Triosephosphate Isomerase Chain: A, B Synonym: Tim, Triose-Phosphate Isomerase Ec: 5.3.1.1 Engineered: Yes		Organism_scientific: Mycobacterium Tuberculosis Organism_taxid: 1773 Gene: Tpia, Tpi, Rv1438, Mt1482, Mtcy493.16c Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Ava0421
symmetry	Space Group: C 1 2 1	R_factor 0.143 R_Free 0.169
crystal cell	length a length b length c angle alpha angle beta angle gamma 133.120 55.760 76.420 90.00 104.01 90.00
method	X-Ray Diffraction	resolution	1.55 Å
ligand	GOL	enzyme	Isomerase E.C.5.3.1.1 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Increasing the structural coverage of tuberculosis drug targets., Baugh L, Phan I, Begley DW, Clifton MC, Armour B, Dranow DM, Taylor BM, Muruthi MM, Abendroth J, Fairman JW, Fox D 3rd, Dieterich SH, Staker BL, Gardberg AS, Choi R, Hewitt SN, Napuli AJ, Myers J, Barrett LK, Zhang Y, Ferrell M, Mundt E, Thompkins K, Tran N, Lyons-Abbott S, Abramov A, Sekar A, Serbzhinskiy D, Lorimer D, Buchko GW, Stacy R, Stewart LJ, Edwards TE, Van Voorhis WC, Myler PJ, Tuberculosis (Edinb). 2014 Dec 19. pii: S1472-9792(14)20565-8. doi:, 10.1016/j.tube.2014.12.003. PMID:25613812

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (94 Kb) [Save to disk] Biological Unit Coordinates (3gvg.pdb1.gz) 89 Kb LPC: Ligand-Protein Contacts for 3GVG CSU: Contacts of Structural Units for 3GVG Likely Quarternary Molecular Structure file(s) for 3GVG Structure Factors (1165 Kb) Retrieve 3GVG in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3GVG from S2C, [Save to disk] Re-refined 3gvg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3GVG in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3GVG

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3GVG, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3gvg_A] [3gvg_B] [3gvg] SWISS-PROT database: [P66940] Domain organization of [TPIS_MYCTU] by SWISSPFAM

Other resources with information on 3GVG

Community annotation for 3GVG at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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