3GVY Metal Binding Protein date Mar 31, 2009
title Crystal Structure Of Bacterioferritin From R.Sphaeroides
authors K.Y.Hwang, K.H.Nam
compound source
Molecule: Bacterioferritin
Chain: A, B, C
Organism_scientific: Rhodobacter Sphaeroides
Organism_taxid: 272943
Strain: 2.4.1
Other_details: Native Protein As-Isolated
symmetry Space Group: I 4 2 2
R_factor 0.227 R_Free 0.284
crystal
cell
length a length b length c angle alpha angle beta angle gamma
160.495 160.495 116.276 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand FE, HEM enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B
  • ferroxidase activity


  • Primary referenceCrystal structure of bacterioferritin from Rhodobacter sphaeroides., Nam KH, Xu Y, Piao S, Priyadarshi A, Lee EH, Kim HY, Jeon YH, Ha NC, Hwang KY, Biochem Biophys Res Commun. 2009 Dec 5. PMID:19968959
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (83 Kb) [Save to disk]
  • Biological Unit Coordinates (3gvy.pdb1.gz) 610 Kb
  • LPC: Ligand-Protein Contacts for 3GVY
  • CSU: Contacts of Structural Units for 3GVY
  • Structure Factors (256 Kb)
  • Retrieve 3GVY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3GVY from S2C, [Save to disk]
  • Re-refined 3gvy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3GVY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3GVY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3GVY, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3gvy_B] [3gvy_C] [3gvy] [3gvy_A]
  • SWISS-PROT database: [Q3J696]
  • Domain organization of [Q3J696_RHOS4] by SWISSPFAM
  • Other resources with information on 3GVY
  • Community annotation for 3GVY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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