3GW7 Hydrolase date Mar 31, 2009
title Crystal Structure Of A Metal-Dependent Phosphohydrolase With Hd Domain (Yedj) From Escherichia Coli In Complex With Nick Northeast Structural Genomics Consortium Target Er63
authors F.Forouhar, M.Abashidze, J.Seetharaman, J.Janjua, R.Xiao, K.Cunni L.Ma, L.Zhao, J.K.Everett, R.Nair, T.B.Acton, B.Rost, G.T.Monteli J.F.Hunt, L.Tong, Northeast Structural Genomics Consortium (N
compound source
Molecule: Uncharacterized Protein Yedj
Chain: A, B
Engineered: Yes
 Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333
Strain: K-12 Mg1655
Atcc: 47076
Gene: B1962, Jw1945, Yedj
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)+Magic
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21
symmetry Space Group: P 63
R_factor 0.260 R_Free 0.294
crystal
cell
length a length b length c angle alpha angle beta angle gamma
99.408 99.408 130.629 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.30 Å
ligand NI enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk]
  • Biological Unit Coordinates (3gw7.pdb1.gz) 68 Kb
  • LPC: Ligand-Protein Contacts for 3GW7
  • CSU: Contacts of Structural Units for 3GW7
  • Likely Quarternary Molecular Structure file(s) for 3GW7
  • Structure Factors (288 Kb)
  • Retrieve 3GW7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3GW7 from S2C, [Save to disk]
  • Re-refined 3gw7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3GW7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3GW7
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3GW7, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3gw7] [3gw7_B] [3gw7_A]
  • SWISS-PROT database: [P46144]
  • Domain organization of [YEDJ_ECOLI] by SWISSPFAM
  • Domain found in 3GW7: [HDc ] by SMART
    • Other resources with information on 3GW7
  • Community annotation for 3GW7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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