3GWS Hormone Activator date Apr 01, 2009
title Crystal Structure Of T3-Bound Thyroid Hormone Receptor
authors A.S.Nascimento, S.M.G.Dias, F.M.Nunes, R.Aparicio, I.Polikarpov, J.D.Baxter, P.Webb
compound source
Molecule: Thyroid Hormone Receptor Beta
Chain: X
Fragment: Ligand Binding Domain (Unp Residues 202 To 460)
Synonym: Nuclear Receptor Subfamily 1 Group A Member 2
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Thrb, Erba2, Nr1a2, Thr1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 31 2 1
R_factor 0.191 R_Free 0.233
crystal
cell
length a length b length c angle alpha angle beta angle gamma
68.974 68.974 131.247 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.20 Å
ligand CAS, T3 BindingDB enzyme
note 3GWS supersedes 2H6W
Gene
Ontology
ChainFunctionProcessComponent
X


Primary referenceStructural rearrangements in the thyroid hormone receptor hinge domain and their putative role in the receptor function., Nascimento AS, Dias SM, Nunes FM, Aparicio R, Ambrosio AL, Bleicher L, Figueira AC, Santos MA, de Oliveira Neto M, Fischer H, Togashi M, Craievich AF, Garratt RC, Baxter JD, Webb P, Polikarpov I, J Mol Biol. 2006 Jul 14;360(3):586-98. Epub 2006 May 19. PMID:16781732
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (90 Kb) [Save to disk]
  • Biological Unit Coordinates (3gws.pdb1.gz) 84 Kb
  • LPC: Ligand-Protein Contacts for 3GWS
  • CSU: Contacts of Structural Units for 3GWS
  • Likely Quarternary Molecular Structure file(s) for 3GWS
  • Structure Factors (183 Kb)
  • Retrieve 3GWS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3GWS from S2C, [Save to disk]
  • Re-refined 3gws structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3GWS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3GWS
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3GWS, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3gws] [3gws_X]
  • SWISS-PROT database: [P10828]
  • Domain organization of [THB_HUMAN] by SWISSPFAM
  • Domain found in 3GWS: [HOLI ] by SMART
    • Other resources with information on 3GWS
  • Community annotation for 3GWS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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