3GZK Hydrolase date Apr 07, 2009
title Structure Of A. Acidocaldarius Cellulase Cela
authors S.Morera, K.Eckert, A.Vigouroux
compound source
Molecule: Cellulase
Chain: A
Ec: 3.2.1.4
Engineered: Yes
Organism_scientific: Alicyclobacillus Acidocaldarius Subsp. Acidocaldarius;
Organism_common: Bacillus Acidocaldarius
Organism_taxid: 1388
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 Star De3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pdest17
symmetry Space Group: P 21 21 2
R_factor 0.183 R_Free 0.213
crystal
cell
length a length b length c angle alpha angle beta angle gamma
84.920 129.300 49.040 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand CA, MPD, ZN enzyme Hydrolase E.C.3.2.1.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal Structures of A. acidocaldarius Endoglucanase Cel9A in Complex with Cello-Oligosaccharides: Strong -1 and -2 Subsites Mimic Cellobiohydrolase Activity., Eckert K, Vigouroux A, Lo Leggio L, Morera S, J Mol Biol. 2009 Aug 31. PMID:19729024
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk]
  • Biological Unit Coordinates (3gzk.pdb1.gz) 88 Kb
  • LPC: Ligand-Protein Contacts for 3GZK
  • CSU: Contacts of Structural Units for 3GZK
  • Structure Factors (288 Kb)
  • Retrieve 3GZK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3GZK from S2C, [Save to disk]
  • Re-refined 3gzk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3GZK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3GZK
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3GZK, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3gzk] [3gzk_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3GZK
  • Community annotation for 3GZK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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