3GZP	Oxidoreductase	date	Apr 07, 2009
title	Human Sod1 G93a Metal-Free Variant
authors	A.Galaleldeen, A.B.Taylor, L.J.Whitson, P.J.Hart
compound		source
Molecule: Superoxide Dismutase [Cu-Zn] Chain: A, B, C, D Ec: 1.15.1.1 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Sod1 Expression_system: Saccharomyces Cerevisiae Expression_system_taxid: 4932 Expression_system_strain: Egy118 Expression_system_vector_type: Plasmid Expression_system_plasmid: Yep351-Hsod
symmetry	Space Group: C 1 2 1	R_factor 0.203 R_Free 0.248
crystal cell	length a length b length c angle alpha angle beta angle gamma 113.803 67.917 80.962 90.00 110.86 90.00
method	X-Ray Diffraction	resolution	3.10 Å
ligand		enzyme	Oxidoreductase E.C.1.15.1.1 BRENDA
Gene Ontology	Chain Function Process Component A, D, C, B superoxide dismutase activit... protein binding anterograde axonal transport... retrograde axonal transport
Primary reference	Structural and biophysical properties of metal-free pathogenic SOD1 mutants A4V and G93A., Galaleldeen A, Strange R, Whitson LJ, Antonyuk S, Narayana N, Taylor AB, Schuermann JP, Holloway SP, Hasnain SS, Hart PJ, Arch Biochem Biophys. 2009 Oct 1. PMID:19800308

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (85 Kb) [Save to disk] Biological Unit Coordinates (3gzp.pdb1.gz) 45 Kb Biological Unit Coordinates (3gzp.pdb2.gz) 38 Kb CSU: Contacts of Structural Units for 3GZP Structure Factors (152 Kb) Retrieve 3GZP in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3GZP from S2C, [Save to disk] Re-refined 3gzp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3GZP in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3GZP

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3GZP, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3gzp] [3gzp_C] [3gzp_A] [3gzp_D] [3gzp_B] SWISS-PROT database: [P00441] Domain organization of [SODC_HUMAN] by SWISSPFAM

Other resources with information on 3GZP

Community annotation for 3GZP at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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