3H11	Apoptosis	date	Apr 10, 2009
title	Zymogen Caspase-8:C-Flipl Protease Domain Complex
authors	P.D.Jeffrey, J.W.Yu, Y.Shi
compound		source
Molecule: Casp8 And Fadd-Like Apoptosis Regulator Chain: A Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Cflar, Cash, Casp8ap1, Clarp, Mrit Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet21b
Molecule: Caspase-8 Chain: B Ec: 3.4.22.61 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Casp8, Mch5 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15b
Molecule: Ietd Aldehyde Inhibitor Chain: C Engineered: Yes		Synthetic: Yes
symmetry	Space Group: P 21 21 21	R_factor 0.212 R_Free 0.250
crystal cell	length a length b length c angle alpha angle beta angle gamma 52.990 76.680 114.190 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.90 Å
ligand	ASA	enzyme	Hydrolase E.C.3.4.22.61 BRENDA
note	3H11 is a representative structure
Gene Ontology	Chain Function Process Component A B
Primary reference	Mechanism of procaspase-8 activation by c-FLIPL., Yu JW, Jeffrey PD, Shi Y, Proc Natl Acad Sci U S A. 2009 May 4. PMID:19416807

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk] Biological Unit Coordinates (3h11.pdb1.gz) 74 Kb LPC: Ligand-Protein Contacts for 3H11 CSU: Contacts of Structural Units for 3H11 Likely Quarternary Molecular Structure file(s) for 3H11 Structure Factors (275 Kb) Retrieve 3H11 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3H11 from S2C, [Save to disk] Re-refined 3h11 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3H11 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3H11

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3H11, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3h11_C] [3h11] [3h11_A] [3h11_B] SWISS-PROT database: [Q14790] [O15519] Domain organization of [CASP8_HUMAN] [CFLAR_HUMAN] by SWISSPFAM Domain found in 3H11: [CASc ] by SMART

Other resources with information on 3H11

Community annotation for 3H11 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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