3H2P	Oxidoreductase	date	Apr 14, 2009
title	Human Sod1 D124v Variant
authors	S.V.Seetharaman, D.D.Winkler, A.B.Taylor, X.Cao, L.J.Whitson, P.A.Doucette, J.S.Valentine, M.C.Carroll, V.C.Culotta, P.J.Hart
compound		source
Molecule: Superoxide Dismutase [Cu-Zn] Chain: A, B Ec: 1.15.1.1 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Sod1 Expression_system: Saccharomyces Cerevisiae Expression_system_taxid: 4932 Expression_system_strain: Egy118 Expression_system_vector_type: Plasmid Expression_system_plasmid: Yep351-Hsod
symmetry	Space Group: P 21 21 21	R_factor 0.152 R_Free 0.202
crystal cell	length a length b length c angle alpha angle beta angle gamma 39.919 57.972 105.021 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.55 Å
ligand	ACE, MLI, ZN	enzyme	Oxidoreductase E.C.1.15.1.1 BRENDA
Gene Ontology	Chain Function Process Component A, B superoxide dismutase activit... protein binding anterograde axonal transport... retrograde axonal transport

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (92 Kb) [Save to disk] Biological Unit Coordinates (3h2p.pdb1.gz) 87 Kb LPC: Ligand-Protein Contacts for 3H2P CSU: Contacts of Structural Units for 3H2P Structure Factors (523 Kb) Retrieve 3H2P in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3H2P from S2C, [Save to disk] Re-refined 3h2p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3H2P in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3H2P

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3H2P, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3h2p_A] [3h2p_B] [3h2p] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3H2P

Community annotation for 3H2P at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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