3H3C Transferase date Apr 16, 2009
title Crystal Structure Of Pyk2 In Complex With Sulfoximine-Substi Trifluoromethylpyrimidine Analog
authors S.Han, A.Mistry
compound source
Molecule: Protein Tyrosine Kinase 2 Beta
Chain: A
Synonym: Focal Adhesion Kinase 2, Fadk 2, Proline-Rich Tyro Kinase 2, Cell Adhesion Kinase Beta, Cak Beta, Calcium-Depe Tyrosine Kinase, Cadtk, Related Adhesion Focal Tyrosine Kin Raftk;
Ec: 2.7.10.2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ptk2b, Fak2, Pyk2, Raftk
Expression_system: Unidentified Baculovirus
Expression_system_taxid: 10469
symmetry Space Group: P 1 21 1
R_factor 0.222 R_Free 0.273
crystal
cell
length a length b length c angle alpha angle beta angle gamma
37.281 92.830 42.843 90.00 92.64 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand P1E, SO4 BindingDB enzyme Transferase E.C.2.7.10.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSulfoximine-substituted trifluoromethylpyrimidine analogs as inhibitors of proline-rich tyrosine kinase 2 (PYK2) show reduced hERG activity., Walker DP, Zawistoski MP, McGlynn MA, Li JC, Kung DW, Bonnette PC, Baumann A, Buckbinder L, Houser JA, Boer J, Mistry A, Han S, Guzman-Perez LX, Bioorg Med Chem Lett. 2009 Apr 24. PMID:19428251
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (3h3c.pdb1.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 3H3C
  • CSU: Contacts of Structural Units for 3H3C
  • Likely Quarternary Molecular Structure file(s) for 3H3C
  • Structure Factors (306 Kb)
  • Retrieve 3H3C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3H3C from S2C, [Save to disk]
  • Re-refined 3h3c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3H3C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3H3C
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3H3C, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3h3c_A] [3h3c]
  • SWISS-PROT database: [Q14289]
  • Domain organization of [FAK2_HUMAN] by SWISSPFAM
  • Domain found in 3H3C: [TyrKc ] by SMART
  • Other resources with information on 3H3C
  • Community annotation for 3H3C at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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