3H3T	Lipid Transport	date	Apr 17, 2009
title	Crystal Structure Of The Cert Start Domain In Complex With H
authors	N.Kudo, S.Wakatsuki, R.Kato
compound		source
Molecule: Goodpasture Antigen Binding Protein Chain: A, B Fragment: Cert Start Domain (Residues 347-598) Synonym: Cdna Flj77923, Highly Similar To Homo Sapiens Coll Iv, Alpha 3 (Goodpasture Antigen) Binding Protein, Col4a3bp Transcript Variant 2, Mrna, Collagen, Type Iv, Alpha 3 (Goo Antigen) Binding Protein, Isoform Cra_a; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Dh5alpha Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex-5x1 (Modified)
symmetry	Space Group: P 1 21 1	R_factor 0.205 R_Free 0.264
crystal cell	length a length b length c angle alpha angle beta angle gamma 42.340 74.568 78.021 90.00 102.84 90.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	16H	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Crystal structures of the CERT START domain with inhibitors provide insights into the mechanism of ceramide transfer., Kudo N, Kumagai K, Matsubara R, Kobayashi S, Hanada K, Wakatsuki S, Kato R, J Mol Biol. 2010 Feb 19;396(2):245-51. Epub 2009 Dec 28. PMID:20036255

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (82 Kb) [Save to disk] Biological Unit Coordinates (3h3t.pdb1.gz) 40 Kb Biological Unit Coordinates (3h3t.pdb2.gz) 39 Kb LPC: Ligand-Protein Contacts for 3H3T CSU: Contacts of Structural Units for 3H3T Structure Factors (277 Kb) Retrieve 3H3T in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3H3T from S2C, [Save to disk] Re-refined 3h3t structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3H3T in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3H3T

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3H3T, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3h3t_B] [3h3t_A] [3h3t] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3H3T: [START ] by SMART

Other resources with information on 3H3T

Community annotation for 3H3T at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---