3H47 Viral Protein date Apr 18, 2009
title X-Ray Structure Of Hexameric Hiv-1 Ca
authors O.Pornillos
compound source
Molecule: Capsid Protein P24
Chain: A
Fragment: Unp Residues 133-363
Synonym: Ca
Engineered: Yes
Mutation: Yes
Organism_scientific: Human Immunodeficiency Virus Type 1 (N Isolate);
Organism_common: Hiv-1
Organism_taxid: 11698
Strain: Nl4-3
Gene: Ca, Gag-Pol
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11a
symmetry Space Group: P 6
R_factor 0.232 R_Free 0.270
crystal
cell
length a length b length c angle alpha angle beta angle gamma
90.995 90.995 56.853 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.90 Å
note 3H47 (Molecule of the Month:pdb163)
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceX-ray structures of the hexameric building block of the HIV capsid., Pornillos O, Ganser-Pornillos BK, Kelly BN, Hua Y, Whitby FG, Stout CD, Sundquist WI, Hill CP, Yeager M, Cell. 2009 Jun 26;137(7):1282-92. Epub 2009 Jun 11. PMID:19523676
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (40 Kb) [Save to disk]
  • Biological Unit Coordinates (3h47.pdb1.gz) 204 Kb
  • CSU: Contacts of Structural Units for 3H47
  • Likely Quarternary Molecular Structure file(s) for 3H47
  • Structure Factors (158 Kb)
  • Retrieve 3H47 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3H47 from S2C, [Save to disk]
  • Re-refined 3h47 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3H47 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3H47
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3H47, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3h47_A] [3h47]
  • SWISS-PROT database: [P12497]
  • Domain organization of [POL_HV1N5] by SWISSPFAM
  • Other resources with information on 3H47
  • Community annotation for 3H47 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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