3H4E Viral Protein date Apr 19, 2009
title X-Ray Structure Of Hexameric Hiv-1 Ca
authors O.Pornillos
compound source
Molecule: Capsid Protein P24
Chain: A, B, C, D, E, F, G, H, I, J, K, L
Fragment: Unp Residues 133-363
Synonym: Ca
Engineered: Yes
Mutation: Yes
Organism_scientific: Human Immunodeficiency Virus Type 1 (N Isolate);
Organism_common: Hiv-1
Organism_taxid: 11698
Strain: Nl4-3
Gene: Ca, Gag-Pol
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11a
symmetry Space Group: P 21 21 21
R_factor 0.239 R_Free 0.263
crystal
cell
length a length b length c angle alpha angle beta angle gamma
136.062 136.657 208.454 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, K, E, B, H, C, D, I, G, L


Primary referenceX-ray structures of the hexameric building block of the HIV capsid., Pornillos O, Ganser-Pornillos BK, Kelly BN, Hua Y, Whitby FG, Stout CD, Sundquist WI, Hill CP, Yeager M, Cell. 2009 Jun 26;137(7):1282-92. Epub 2009 Jun 11. PMID:19523676
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (387 Kb) [Save to disk]
  • Biological Unit Coordinates (3h4e.pdb1.gz) 191 Kb
  • Biological Unit Coordinates (3h4e.pdb2.gz) 191 Kb
  • CSU: Contacts of Structural Units for 3H4E
  • Likely Quarternary Molecular Structure file(s) for 3H4E
  • Structure Factors (802 Kb)
  • Retrieve 3H4E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3H4E from S2C, [Save to disk]
  • Re-refined 3h4e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3H4E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3H4E
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3H4E, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3h4e_E] [3h4e_F] [3h4e_B] [3h4e_I] [3h4e_K] [3h4e_L] [3h4e_H] [3h4e_A] [3h4e_C] [3h4e_J] [3h4e_D] [3h4e_G] [3h4e]
  • SWISS-PROT database: [P12497]
  • Domain organization of [POL_HV1N5] by SWISSPFAM
  • Other resources with information on 3H4E
  • Community annotation for 3H4E at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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