3H4M Hydrolase date Apr 20, 2009
title Aaa Atpase Domain Of The Proteasome- Activating Nucleotidase
authors P.Jeffrey, F.Zhang, M.Hu, G.Tian, P.Zhang, D.Finley, Y.Shi
compound source
Molecule: Proteasome-Activating Nucleotidase
Chain: A, B, C
Fragment: Pan Atpase Domain (155-430)
Synonym: Proteasome Regulatory Subunit
Engineered: Yes
 Organism_scientific: Methanocaldococcus Jannaschii
Organism_common: Methanococcus Jannaschii
Organism_taxid: 2190
Gene: Pan, Mj1176
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 (De3)
symmetry Space Group: P 65
R_factor 0.221 R_Free 0.277
crystal
cell
length a length b length c angle alpha angle beta angle gamma
116.425 116.425 164.169 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.11 Å
ligand ADP enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceStructural insights into the regulatory particle of the proteasome from Methanocaldococcus jannaschii., Zhang F, Hu M, Tian G, Zhang P, Finley D, Jeffrey PD, Shi Y, Mol Cell. 2009 May 14;34(4):473-84. PMID:19481527
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (129 Kb) [Save to disk]
  • Biological Unit Coordinates (3h4m.pdb1.gz) 42 Kb
  • Biological Unit Coordinates (3h4m.pdb2.gz) 42 Kb
  • Biological Unit Coordinates (3h4m.pdb3.gz) 42 Kb
  • LPC: Ligand-Protein Contacts for 3H4M
  • CSU: Contacts of Structural Units for 3H4M
  • Likely Quarternary Molecular Structure file(s) for 3H4M
  • Structure Factors (170 Kb)
  • Retrieve 3H4M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3H4M from S2C, [Save to disk]
  • Re-refined 3h4m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3H4M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3H4M
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3H4M, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3h4m_A] [3h4m_B] [3h4m] [3h4m_C]
  • SWISS-PROT database: [Q58576]
  • Domain organization of [PSMR_METJA] by SWISSPFAM
  • Domain found in 3H4M: [AAA ] by SMART
    • Other resources with information on 3H4M
  • Community annotation for 3H4M at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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