3H5I Transcription date Apr 22, 2009
title Crystal Structure Of The N-Terminal Domain Of A Response Regulatorsensory Boxggdef 3-Domain Protein From Carboxydo Hydrogenoformans
authors J.B.Bonanno, M.Gilmore, K.T.Bain, M.Iizuka, R.Romero, S.Wasserman J.M.Sauder, S.K.Burley, S.C.Almo, New York Sgx Research Center Structural Genomics (Nysgxrc)
compound source
Molecule: Response Regulatorsensory Box Proteinggdef Doma Protein;
Chain: A
Fragment: Residues 2-130
Engineered: Yes
 Organism_scientific: Carboxydothermus Hydrogenoformans Z-29
Organism_taxid: 246194
Gene: Chy_0880
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Modified Pet26
symmetry Space Group: H 3 2
R_factor 0.212 R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
86.668 86.668 131.156 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.90 Å
ligand CL, NA enzyme
Gene CHY
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (25 Kb) [Save to disk]
  • Biological Unit Coordinates (3h5i.pdb1.gz) 59 Kb
  • LPC: Ligand-Protein Contacts for 3H5I
  • CSU: Contacts of Structural Units for 3H5I
  • Likely Quarternary Molecular Structure file(s) for 3H5I
  • Structure Factors (708 Kb)
  • Retrieve 3H5I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3H5I from S2C, [Save to disk]
  • Re-refined 3h5i structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3H5I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3H5I
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3H5I, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3h5i] [3h5i_A]
  • SWISS-PROT database: [Q3ADQ4]
  • Domain organization of [Q3ADQ4_CARHZ] by SWISSPFAM
  • Domain found in 3H5I: [REC ] by SMART
    • Other resources with information on 3H5I
  • Community annotation for 3H5I at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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