3H5O Transcription Regulator date Apr 22, 2009
title The Crystal Structure Of Transcription Regulator Gntr From Chromobacterium Violaceum
authors Z.Zhang, S.K.Burley, S.Swaminathan, New York Sgx Research Cente Structural Genomics (Nysgxrc)
compound source
Molecule: Transcriptional Regulator Gntr
Chain: A, B
Engineered: Yes
 Organism_scientific: Chromobacterium Violaceum
Organism_taxid: 536
Gene: Cv_2956, Gntr
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)-Codon+Ril-Stratagene
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Bc-Psgx(Bc)
symmetry Space Group: P 1 21 1
R_factor 0.189 R_Free 0.231
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.365 67.882 90.362 90.00 92.43 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand MSE, SO4 enzyme
Gene CV
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (94 Kb) [Save to disk]
  • Biological Unit Coordinates (3h5o.pdb1.gz) 44 Kb
  • Biological Unit Coordinates (3h5o.pdb2.gz) 44 Kb
  • Biological Unit Coordinates (3h5o.pdb3.gz) 86 Kb
  • LPC: Ligand-Protein Contacts for 3H5O
  • CSU: Contacts of Structural Units for 3H5O
  • Likely Quarternary Molecular Structure file(s) for 3H5O
  • Structure Factors (1150 Kb)
  • Retrieve 3H5O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3H5O from S2C, [Save to disk]
  • Re-refined 3h5o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3H5O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3H5O
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3H5O, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3h5o_A] [3h5o] [3h5o_B]
  • SWISS-PROT database: [Q7NTU7]
  • Domain organization of [Q7NTU7_CHRVO] by SWISSPFAM
  • Domain found in 3H5O: [HTH_LACI ] by SMART
    • Other resources with information on 3H5O
  • Community annotation for 3H5O at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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