3H6S	Hydrolase Hydrolase Inhibitor	date	Apr 23, 2009
title	Structure Of Clitocypin - Cathepsin V Complex
authors	M.Renko, J.Sabotic, J.Brzin, D.Turk
compound		source
Molecule: Cathepsin L2 Chain: A, B, C, D Synonym: Cathepsin V, Cathepsin U Ec: 3.4.22.43 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ctsl2, Catl2, Ctsu, Ctsv, Unq268pro305 Expression_system: Pichia Pastoris Expression_system_taxid: 4922
Molecule: Clitocypin Analog Chain: E, F, G, H Engineered: Yes Mutation: Yes		Organism_scientific: Clitocybe Nebularis Organism_common: Clouded Agaric Organism_taxid: 117024 Gene: Clt5 Expression_system: Pichia Pastoris Expression_system_taxid: 4922
symmetry	Space Group: P 21 21 2	R_factor 0.182 R_Free 0.239
crystal cell	length a length b length c angle alpha angle beta angle gamma 97.180 177.760 96.180 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.22 Å
ligand	SME, SO4	enzyme	Hydrolase E.C.3.4.22.43 BRENDA
Gene Ontology	Chain Function Process Component A, B, C, D F, E, H, G cysteine-type endopeptidase ...
Primary reference	Versatile loops in mycocypins inhibit three protease families., Renko M, Sabotic J, Mihelic M, Brzin J, Kos J, Turk D, J Biol Chem. 2010 Jan 1;285(1):308-16. Epub 2009 Oct 21. PMID:19846555

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (258 Kb) [Save to disk] Biological Unit Coordinates (3h6s.pdb1.gz) 66 Kb Biological Unit Coordinates (3h6s.pdb2.gz) 64 Kb Biological Unit Coordinates (3h6s.pdb3.gz) 65 Kb Biological Unit Coordinates (3h6s.pdb4.gz) 64 Kb LPC: Ligand-Protein Contacts for 3H6S CSU: Contacts of Structural Units for 3H6S Structure Factors (608 Kb) Retrieve 3H6S in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3H6S from S2C, [Save to disk] Re-refined 3h6s structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3H6S in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3H6S

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3H6S, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3h6s] [3h6s_G] [3h6s_B] [3h6s_A] [3h6s_H] [3h6s_D] [3h6s_C] [3h6s_F] [3h6s_E] SWISS-PROT database: [O60911] [Q3Y9I6] Domain organization of [CATL2_HUMAN] [Q3Y9I6_CLINE] by SWISSPFAM Domain found in 3H6S: [Pept_C1 ] by SMART

Other resources with information on 3H6S

Community annotation for 3H6S at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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