3H73 Hydrolase date Apr 24, 2009
title Crystal Structure Of Streptococcus Pneumoniae D39 Neuraminid Precursor (Nana) In Complex With Dana
authors Y.S.Hsiao, L.Tong
compound source
Molecule: Sialidase A
Chain: A, B
Fragment: Unp Residues 317-793
Synonym: Neuraminidase A
Ec: 3.2.1.18
Engineered: Yes
Organism_scientific: Streptococcus Pneumoniae
Organism_taxid: 171101
Strain: R6
Gene: Nana, Spr1536
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Star
Expression_system_vector_type: Pet28a
symmetry Space Group: C 1 2 1
R_factor 0.178 R_Free 0.209
crystal
cell
length a length b length c angle alpha angle beta angle gamma
158.340 47.400 137.320 90.00 116.45 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand DAN enzyme Hydrolase E.C.3.2.1.18 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structures of respiratory pathogen neuraminidases., Hsiao YS, Parker D, Ratner AJ, Prince A, Tong L, Biochem Biophys Res Commun. 2009 Mar 13;380(3):467-71. Epub 2009 Jan 23. PMID:19284989
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (183 Kb) [Save to disk]
  • Biological Unit Coordinates (3h73.pdb1.gz) 91 Kb
  • Biological Unit Coordinates (3h73.pdb2.gz) 91 Kb
  • LPC: Ligand-Protein Contacts for 3H73
  • CSU: Contacts of Structural Units for 3H73
  • Likely Quarternary Molecular Structure file(s) for 3H73
  • Structure Factors (1460 Kb)
  • Retrieve 3H73 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3H73 from S2C, [Save to disk]
  • Re-refined 3h73 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3H73 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3H73
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3H73, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3h73_B] [3h73_A] [3h73]
  • SWISS-PROT database: [P62576]
  • Domain organization of [NANA_STRR6] by SWISSPFAM
  • Other resources with information on 3H73
  • Community annotation for 3H73 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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