3H78 Transferase date Apr 24, 2009
title Crystal Structure Of Pseudomonas Aeruginosa Pqsd C112a Mutan Complex With Anthranilic Acid
authors A.K.Bera, V.Atanasova, J.F.Parsons
compound source
Molecule: Pqs Biosynthetic Enzyme
Chain: A, B
Ec: 2.3.1.180
Engineered: Yes
Mutation: Yes
Organism_scientific: Pseudomonas Aeruginosa Pao1
Organism_taxid: 208964
Strain: Pa01 1c Prs 101 Lmg 12228
Atcc: 15692
Gene: Pqsd, Pa0999
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: C 1 2 1
R_factor 0.150 R_Free 0.195
crystal
cell
length a length b length c angle alpha angle beta angle gamma
81.465 59.178 125.993 90.00 92.30 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand BE2 enzyme Transferase E.C.2.3.1.180 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure of PqsD, a Pseudomonas quinolone signal biosynthetic enzyme, in complex with anthranilate., Bera AK, Atanasova V, Robinson H, Eisenstein E, Coleman JP, Pesci EC, Parsons JF, Biochemistry. 2009 Sep 15;48(36):8644-55. PMID:19694421
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (228 Kb) [Save to disk]
  • Biological Unit Coordinates (3h78.pdb1.gz) 223 Kb
  • LPC: Ligand-Protein Contacts for 3H78
  • CSU: Contacts of Structural Units for 3H78
  • Structure Factors (969 Kb)
  • Retrieve 3H78 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3H78 from S2C, [Save to disk]
  • Re-refined 3h78 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3H78 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3H78
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3H78, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3h78] [3h78_A] [3h78_B]
  • SWISS-PROT database: [P20582]
  • Domain organization of [PQSD_PSEAE] by SWISSPFAM
  • Other resources with information on 3H78
  • Community annotation for 3H78 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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