3HAE Immune System date May 01, 2009
title Rational Development Of High-Affinity T-Cell Receptor-Like A
authors G.Stewart-Jones, A.Wadle, A.Hombach, E.Shenderov, G.Held, E.Fisch
compound source
Molecule: Hla Class I Histocompatibility Antigen, A-2 Alpha
Chain: A, D, J, P
Fragment: Unp Residues 25-300
Synonym: Mhc Class I Antigen A2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pett22 B+

Molecule: Beta-2-Microglobulin
Chain: B, E, K, Q
Synonym: Beta-2-Microglobulin Form Pi 5.3
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pett22 B+

Molecule: Nyeso-1 Peptide
Chain: C, F, M, R
Engineered: Yes

Synthetic: Yes
Other_details: This Sequence Occurs Naturally In Humans.

Molecule: Antibody Light Chain
Chain: L, G, N, S
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Hb2151
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phen

Molecule: Antibody Heavy Chain
Chain: H, I, O, T
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Hb2151
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phen
symmetry Space Group: P 1 21 1
R_factor 0.201 R_Free 0.283
crystal
cell
length a length b length c angle alpha angle beta angle gamma
70.794 105.596 256.451 90.00 92.26 90.00
method X-Ray Diffractionresolution 2.90 Å
note 3HAE supersedes 3GJG
Gene
Ontology
ChainFunctionProcessComponent
Q, K, E, B
  • cellular response to iron io...

  • Primary referenceRational development of high-affinity T-cell receptor-like antibodies., Stewart-Jones G, Wadle A, Hombach A, Shenderov E, Held G, Fischer E, Kleber S, Stenner-Liewen F, Bauer S, McMichael A, Knuth A, Abken H, Hombach AA, Cerundolo V, Jones EY, Renner C, Proc Natl Acad Sci U S A. 2009 Apr 7;106(14):5784-8. Epub 2009 Mar 23. PMID:19307587
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (453 Kb) [Save to disk]
  • Biological Unit Coordinates (3hae.pdb1.gz) 117 Kb
  • Biological Unit Coordinates (3hae.pdb2.gz) 117 Kb
  • Biological Unit Coordinates (3hae.pdb3.gz) 117 Kb
  • Biological Unit Coordinates (3hae.pdb4.gz) 117 Kb
  • CSU: Contacts of Structural Units for 3HAE
  • Likely Quarternary Molecular Structure file(s) for 3HAE
  • Structure Factors (669 Kb)
  • Retrieve 3HAE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3HAE from S2C, [Save to disk]
  • Re-refined 3hae structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3HAE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3HAE
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3HAE, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3hae_R] [3hae_J] [3hae_A] [3hae_L] [3hae_K] [3hae_N] [3hae_C] [3hae_P] [3hae_D] [3hae_H] [3hae_G] [3hae_T] [3hae_B] [3hae] [3hae_I] [3hae_O] [3hae_M] [3hae_E] [3hae_F] [3hae_Q] [3hae_S]
  • SWISS-PROT database: [P01892] [P61769]
  • Domain organization of [1A02_HUMAN] [B2MG_HUMAN] by SWISSPFAM
  • Domains found in 3HAE: [IG_like] [IGc1] [IGv ] by SMART
  • Other resources with information on 3HAE
  • Community annotation for 3HAE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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