3HC7 Cell Adhesion date May 05, 2009
title Crystal Structure Of Lysin B From Mycobacteriophage D29
authors Q.Sun, J.C.Sacchettini
compound source
Molecule: Gene 12 Protein
Chain: A
Synonym: Gp12
Engineered: Yes
Organism_scientific: Mycobacterium Phage D29
Organism_taxid: 28369
Gene: 12, Gp12
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Plam3
symmetry Space Group: P 43 21 2
R_factor 0.205 R_Free 0.250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
92.530 92.530 69.630 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceMycobacteriophage Lysin B is a novel mycolylarabinogalactan esterase., Payne K, Sun Q, Sacchettini J, Hatfull GF, Mol Microbiol. 2009 Aug;73(3):367-81. Epub 2009 Jun 22. PMID:19555454
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (92 Kb) [Save to disk]
  • Biological Unit Coordinates (3hc7.pdb1.gz) 87 Kb
  • CSU: Contacts of Structural Units for 3HC7
  • Likely Quarternary Molecular Structure file(s) for 3HC7
  • Structure Factors (400 Kb)
  • Retrieve 3HC7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3HC7 from S2C, [Save to disk]
  • Re-refined 3hc7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3HC7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3HC7
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3HC7, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3hc7_A] [3hc7]
  • SWISS-PROT database: [O64205]
  • Domain organization of [VG12_BPMD2] by SWISSPFAM
  • Other resources with information on 3HC7
  • Community annotation for 3HC7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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