3HDV Transcription Regulator date May 07, 2009
title Crystal Structure Of Response Regulator Receiver Protein Fro Pseudomonas Putida
authors A.Bagaria, S.K.Burley, S.Swaminathan, New York Sgx Research Cen Structural Genomics (Nysgxrc)
compound source
Molecule: Response Regulator
Chain: A, B, C, D
Fragment: Response Regulator
Engineered: Yes
Organism_scientific: Pseudomonas Putida
Organism_taxid: 160488
Strain: Kt2440
Gene: Pp_0355, Pp0355
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Psgx3(Bc)
symmetry Space Group: P 21 21 2
R_factor 0.205 R_Free 0.245
crystal
cell
length a length b length c angle alpha angle beta angle gamma
110.769 140.436 48.571 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.09 Å
ligand MSE enzyme
Gene PP
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (86 Kb) [Save to disk]
  • Biological Unit Coordinates (3hdv.pdb1.gz) 78 Kb
  • Biological Unit Coordinates (3hdv.pdb2.gz) 40 Kb
  • Biological Unit Coordinates (3hdv.pdb3.gz) 40 Kb
  • LPC: Ligand-Protein Contacts for 3HDV
  • CSU: Contacts of Structural Units for 3HDV
  • Likely Quarternary Molecular Structure file(s) for 3HDV
  • Structure Factors (665 Kb)
  • Retrieve 3HDV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3HDV from S2C, [Save to disk]
  • Re-refined 3hdv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3HDV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3HDV
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3HDV, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3hdv] [3hdv_A] [3hdv_C] [3hdv_D] [3hdv_B]
  • SWISS-PROT database: [Q88QX9]
  • Domain organization of [Q88QX9_PSEPK] by SWISSPFAM
  • Domain found in 3HDV: [REC ] by SMART
  • Other resources with information on 3HDV
  • Community annotation for 3HDV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science