3HKS Translation, Rna Binding Protein date May 25, 2009
title Crystal Structure Of Eukaryotic Translation Initiation Facto From Arabidopsis Thaliana
authors Y.B.Teng, Y.X.He, Y.L.Jiang, Y.X.Chen, C.Z.Zhou
compound source
Molecule: Eukaryotic Translation Initiation Factor 5a-2
Chain: A, B
Synonym: Eif-5a-2
Engineered: Yes
 Organism_scientific: Arabidopsis Thaliana
Organism_common: Mouse-Ear Cress, Thale-Cress
Organism_taxid: 3702
Gene: At1g26630.1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 De3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28b
symmetry Space Group: P 21 21 21
R_factor 0.202 R_Free 0.241
crystal
cell
length a length b length c angle alpha angle beta angle gamma
56.560 79.830 94.950 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand EDO enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • translation elongation facto...


    • Primary referenceCrystal structure of Arabidopsis translation initiation factor eIF-5A2., Teng YB, Ma XX, He YX, Jiang YL, Du J, Xiang C, Chen Y, Zhou CZ, Proteins. 2009 Jul 7;77(3):736-740. PMID:19676114
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (3hks.pdb1.gz) 25 Kb
  • Biological Unit Coordinates (3hks.pdb2.gz) 24 Kb
  • LPC: Ligand-Protein Contacts for 3HKS
  • CSU: Contacts of Structural Units for 3HKS
  • Structure Factors (320 Kb)
  • Retrieve 3HKS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3HKS from S2C, [Save to disk]
  • Re-refined 3hks structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3HKS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3HKS
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3HKS, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3hks_B] [3hks_A] [3hks]
  • SWISS-PROT database: [Q93VP3]
  • Domain organization of [IF5A2_ARATH] by SWISSPFAM
  • Domain found in 3HKS: [eIF-5a ] by SMART
    • Other resources with information on 3HKS
  • Community annotation for 3HKS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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