3HL7	Transferase	date	May 26, 2009
title	Crystal Structure Of Human P38alpha Complexed With Sd-0006
authors	H.S.Shieh, R.G.Kurumbail, R.A.Stegeman, J.M.Williams
compound		source
Molecule: Mitogen-Activated Protein Kinase 14 Chain: A Synonym: Mitogen-Activated Protein Kinase P38 Alpha, Map Ki Alpha, Cytokine Suppressive Anti-Inflammatory Drug-Binding Csaid-Binding Protein, Csbp, Max-Interacting Protein 2, Map Mxi2, Sapk2a; Ec: 2.7.11.24 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Csbp, Csbp1, Csbp2, Cspb1, Mapk14, Mxi2, Thp-1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Dh10b Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex4t-1
symmetry	Space Group: P 21 21 21	R_factor 0.199 R_Free 0.228
crystal cell	length a length b length c angle alpha angle beta angle gamma 65.088 74.525 77.587 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.88 Å
ligand	I46, I47 BindingDB	enzyme	Transferase E.C.2.7.11.24 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structural bioinformatics-based prediction of exceptional selectivity of p38 MAP kinase inhibitor PH-797804., Xing L, Shieh HS, Selness SR, Devraj RV, Walker JK, Devadas B, Hope HR, Compton RP, Schindler JF, Hirsch JL, Benson AG, Kurumbail RG, Stegeman RA, Williams JM, Broadus RM, Walden Z, Monahan JB, Biochemistry. 2009 Jul 14;48(27):6402-11. PMID:19496616

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk] Biological Unit Coordinates (3hl7.pdb1.gz) 60 Kb LPC: Ligand-Protein Contacts for 3HL7 CSU: Contacts of Structural Units for 3HL7 Likely Quarternary Molecular Structure file(s) for 3HL7 Structure Factors (449 Kb) Retrieve 3HL7 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3HL7 from S2C, [Save to disk] Re-refined 3hl7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3HL7 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3HL7

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3HL7, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3hl7] [3hl7_A] SWISS-PROT database: [Q16539] Domain organization of [MK14_HUMAN] by SWISSPFAM Domain found in 3HL7: [S_TKc ] by SMART

Other resources with information on 3HL7

Community annotation for 3HL7 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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