3HLM Transferase date May 27, 2009
title Crystal Structure Of Mouse Mitochondrial Aspartate Aminotransferasekynurenine Aminotransferase Iv
authors Q.Han, H.Robinson, J.Li
compound source
Molecule: Aspartate Aminotransferase, Mitochondrial
Chain: A, B, C, D
Synonym: Maspat, Transaminase A, Glutamate Oxaloacetate Tra 2, Fatty Acid-Binding Protein, Fabp-1, Fabppm;
Ec: 2.6.1.1
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Got-2, Got2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ptyb
symmetry Space Group: P 21 21 2
R_factor 0.181 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
284.322 76.792 87.416 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand GOL, LLP enzyme Transferase E.C.2.6.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • kynurenine-oxoglutarate tran...


  • Primary referenceStructure, expression, and function of kynurenine aminotransferases in human and rodent brains., Han Q, Cai T, Tagle DA, Li J, Cell Mol Life Sci. 2010 Feb;67(3):353-68. Epub 2009 Oct 15. PMID:19826765
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (268 Kb) [Save to disk]
  • Biological Unit Coordinates (3hlm.pdb1.gz) 133 Kb
  • Biological Unit Coordinates (3hlm.pdb2.gz) 133 Kb
  • LPC: Ligand-Protein Contacts for 3HLM
  • CSU: Contacts of Structural Units for 3HLM
  • Structure Factors (1007 Kb)
  • Retrieve 3HLM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3HLM from S2C, [Save to disk]
  • Re-refined 3hlm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3HLM in 3D
  • Proteopedia, because life has more than 2D.
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3HLM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3HLM, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3hlm_A] [3hlm_C] [3hlm] [3hlm_B] [3hlm_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3HLM
  • Community annotation for 3HLM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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  • Images from IMB Jena Image Library of Biological Macromolecules.

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